| Download Tool |
Before downloading the KEGGConverter Tool you need to install the following software : After intalling at least the two out of three required items you may download and unzip the KEGGConverter Tool found in the following link. In order to use it simply unzip it in a folder and run the KeggConverter.jar in a command line environment. If you already have the tool and need to update to the latest annotation tab files follow the links below: Compounds.tab Created: Friday, 03rd September, 2010 01:07am EnzymeNames.tab Created: Friday, 03rd September, 2010 01:07am Enzyme-Organism.tab Created: Friday, 03rd September, 2010 01:07am GlycanNames.tab Created: Friday, 03rd September, 2010 01:07am |
| Usage: |
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'java -jar keggconvert.jar justConvert' to process kgml files from .\in directory. 'justConvertCD' to process kgml files from .\in directory to CellDesigner sbml. 'makeKinetics' to convert and introduce kinetics in the produced sbml files. 'makeKineticsCD' to convert and introduce kinetics in the produced CellDesigner SBML files. 'merge' to produce a merged kgml file for all KEGG files in .\in directory. 'keepOrphan' to prevent orphan node elimination during model curation.Use it together with 'justConvert' or 'makeKinetics'. 'STATS' to produce reaction statistics for all sbml files in .\out directory. 'dir=mydir/' to use as subdirectories in in&out directories. 'help' to get these available options. In case of being behind proxies you must use options before '-jar': '-Dhttp.proxyHost=xxx.xx.xxx.x -Dhttp.proxyPort=8080' |
| Cite this Tool: |
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KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. Moutselos K, Kanaris I, Chatziioannou A, Maglogiannis I, Kolisis FN BMC Bioinformatics 2009, 10:324 (8 October 2009) |